Commit 0e39eaee authored by Jorn Bruggeman's avatar Jorn Bruggeman
Browse files

removed redundant testcase files

parent 07c74bf5
The namelist file - fabm.nml - specifying a FABM is driver independent. This
means that any of the example fabm.nml provided here can be used by any driver
model.
The different namelist files demonstrates different ways of configuring FABM
at run-time. The first namelist in each file lists the individual models
in the given FABM configuration.
The different example files have been tested using the GOTM driver model. If
you experience any problems with another driver model - please report it
at fabm-users@googlegroups.com.
Howto use:
1) Provide the necessary information for your driver model to integrate with
FABM.
a) For GOTM - copy the file .../GOTM/gotm_fabm.nml to your GOTM set-up
directory.
b) Information for driver ...
2) Copy (or link) one of the example fabm-*.nml files to the directory where
you have your model setup. Name the file fabm.nml.
3) Run your model
!-------------------------------------------------------------------------------
! fabm_nml
!-------------------------------------------------------------------------------
! models [string array]
! a comma-separated list of one or model model names
!-------------------------------------------------------------------------------
&fabm_nml
models = 'gotm_npzd','gotm_npzd','gotm_npzd'
/
!-------------------------------------------------------------------------------
! gotm_npzd - GOTM nutrient-phytoplankton-zooplankton-detritus model
!-------------------------------------------------------------------------------
! n_initial [float, unit = mmol/m^3]
! initial nutrient concentration
! p_initial [float, unit = mmol/m^3]
! initial phytoplankton concentration
! z_initial [float, unit = mmol/m^3]
! initial zooplankton concentration
! d_initial [float, unit = mmol/m^3]
! initial detritus concentration
! p0 [float, unit = mmol/m^3]
! minimum phytoplankton concentration
! z0 [float, unit = mmol/m^3]
! minimum zooplankton concentration
! w_p [float, unit = m/d]
! settling velocity of phytoplankton
! w_d [float, unit = m/d]
! settling velocity of detritus
! kc [float, unit = m^2/mmol N]
! attenuation constant for the self shading effect
! I_min [float, unit = W/m^2]
! minimum photosynthetically active radiation (PAR)
! rmax [float, unit = 1/d]
! maximum nutrient uptake rate
! gmax [float, unit = 1/d]
! maximum grazing rate
! Iv [float]
! Ivlev constant
! alpha [float, unit = mmol N/m^3]
! half saturation
! rpn [float, unit = 1/d]
! p --> n rate (p metabolism)
! rzn [float, unit = 1/d]
! z --> n rate (z metabolism)
! rdn [float, unit = 1/d]
! d --> n rate (remineralisation)
! rpdu [float, unit = 1/d]
! p --> d rate (p mortality), in euphotic zone
! rpdl [float, unit = 1/d]
! p --> d rate (p mortality), below euphotic zone
! rzd [float, unit = 1/d]
! z --> d rate (z mortality)
!-------------------------------------------------------------------------------
&gotm_npzd
n_initial = 4.5,
p_initial = 1e-15,
z_initial = 1e-15,
d_initial = 4.5,
p0 = 0.0225,
z0 = 0.0225,
w_p = -1.0,
w_d = -5.0,
kc = 0.03,
I_min = 25.0,
rmax = 1.0,
gmax = 0.2,
Iv = 1.1,
alpha = 1.35,
rpn = 0.01,
rzn = 0.01,
rdn = 0.003,
rpdu = 0.02,
rpdl = 0.1,
rzd = 0.02,
/
!-------------------------------------------------------------------------------
! gotm_npzd - GOTM nutrient-phytoplankton-zooplankton-detritus model
!-------------------------------------------------------------------------------
! n_initial [float, unit = mmol/m^3]
! initial nutrient concentration
! p_initial [float, unit = mmol/m^3]
! initial phytoplankton concentration
! z_initial [float, unit = mmol/m^3]
! initial zooplankton concentration
! d_initial [float, unit = mmol/m^3]
! initial detritus concentration
! p0 [float, unit = mmol/m^3]
! minimum phytoplankton concentration
! z0 [float, unit = mmol/m^3]
! minimum zooplankton concentration
! w_p [float, unit = m/d]
! settling velocity of phytoplankton
! w_d [float, unit = m/d]
! settling velocity of detritus
! kc [float, unit = m^2/mmol N]
! attenuation constant for the self shading effect
! I_min [float, unit = W/m^2]
! minimum photosynthetically active radiation (PAR)
! rmax [float, unit = 1/d]
! maximum nutrient uptake rate
! gmax [float, unit = 1/d]
! maximum grazing rate
! Iv [float]
! Ivlev constant
! alpha [float, unit = mmol N/m^3]
! half saturation
! rpn [float, unit = 1/d]
! p --> n rate (p metabolism)
! rzn [float, unit = 1/d]
! z --> n rate (z metabolism)
! rdn [float, unit = 1/d]
! d --> n rate (remineralisation)
! rpdu [float, unit = 1/d]
! p --> d rate (p mortality), in euphotic zone
! rpdl [float, unit = 1/d]
! p --> d rate (p mortality), below euphotic zone
! rzd [float, unit = 1/d]
! z --> d rate (z mortality)
!-------------------------------------------------------------------------------
&gotm_npzd
n_initial = 3.5,
p_initial = 1e-15,
z_initial = 1e-15,
d_initial = 4.5,
p0 = 0.0225,
z0 = 0.0225,
w_p = -1.0,
w_d = -5.0,
kc = 0.03,
I_min = 25.0,
rmax = 1.0,
gmax = 0.2,
Iv = 1.1,
alpha = 1.35,
rpn = 0.01,
rzn = 0.01,
rdn = 0.003,
rpdu = 0.02,
rpdl = 0.1,
rzd = 0.02,
/
!-------------------------------------------------------------------------------
! gotm_npzd - GOTM nutrient-phytoplankton-zooplankton-detritus model
!-------------------------------------------------------------------------------
! n_initial [float, unit = mmol/m^3]
! initial nutrient concentration
! p_initial [float, unit = mmol/m^3]
! initial phytoplankton concentration
! z_initial [float, unit = mmol/m^3]
! initial zooplankton concentration
! d_initial [float, unit = mmol/m^3]
! initial detritus concentration
! p0 [float, unit = mmol/m^3]
! minimum phytoplankton concentration
! z0 [float, unit = mmol/m^3]
! minimum zooplankton concentration
! w_p [float, unit = m/d]
! settling velocity of phytoplankton
! w_d [float, unit = m/d]
! settling velocity of detritus
! kc [float, unit = m^2/mmol N]
! attenuation constant for the self shading effect
! I_min [float, unit = W/m^2]
! minimum photosynthetically active radiation (PAR)
! rmax [float, unit = 1/d]
! maximum nutrient uptake rate
! gmax [float, unit = 1/d]
! maximum grazing rate
! Iv [float]
! Ivlev constant
! alpha [float, unit = mmol N/m^3]
! half saturation
! rpn [float, unit = 1/d]
! p --> n rate (p metabolism)
! rzn [float, unit = 1/d]
! z --> n rate (z metabolism)
! rdn [float, unit = 1/d]
! d --> n rate (remineralisation)
! rpdu [float, unit = 1/d]
! p --> d rate (p mortality), in euphotic zone
! rpdl [float, unit = 1/d]
! p --> d rate (p mortality), below euphotic zone
! rzd [float, unit = 1/d]
! z --> d rate (z mortality)
!-------------------------------------------------------------------------------
&gotm_npzd
n_initial = 5.5,
p_initial = 1e-15,
z_initial = 1e-15,
d_initial = 4.5,
p0 = 0.0225,
z0 = 0.0225,
w_p = -1.0,
w_d = -5.0,
kc = 0.03,
I_min = 25.0,
rmax = 1.0,
gmax = 0.2,
Iv = 1.1,
alpha = 1.35,
rpn = 0.01,
rzn = 0.01,
rdn = 0.003,
rpdu = 0.02,
rpdl = 0.1,
rzd = 0.02,
/
\chapter{FABM test cases\label{chap:testcases}}
A description of the different test case namelists.
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