Commit 61ee1113 authored by Jorn Bruggeman's avatar Jorn Bruggeman
Browse files

added uhh-clc testcase

parent ec0f9d21
instances:
nutrient:
model: uhh_ergom_split_base
parameters:
sfl_po: 0.0312 # , default = 0.0015
sfl_ni: 0.54 # , default = 0.09
sfl_am: 0.4608 # , default = 0.07
fluff: false # , default = false
kc: 0.03 # , default = 0.03
lan: 0.024 # , default = 0.1
anmx: 0.0 # , default = 0.05
oan: 0.01 # , default = 0.01
beta_an: 0.11 # , default = 0.11
lda: 0.005 # , default = 0.003
tda: 13.0 # , default = 13.0
beta_da: 20.0 # , default = 20.0
pvel: 5.0 # , default = 5.0
sr: 0.0625 # , default = 0.0625
s1: 5.3 # , default = 5.3
s2: 6.625 # , default = 6.625
s3: 8.625 # , default = 8.625
s4: 0.67 # , default = 2.0
a0: 31.25 # , default = 31.25
a1: 14.603 # , default = 14.603
a2: 0.4025 # , default = 0.4025
lds: 3.5 # , default = 3.5
lsd: 25.0 # , default = 25.0
tau_crit: 0.07 # , default = 0.07
lsa: 0.0001 # , default = 0.001
bsa: 0.15 # , default = 0.15
ph1: 0.15 # , default = 0.15
ph2: 0.1 # , default = 0.1
w_de: -3.0 # , default = -3.0
initialization:
det: 5.0 # detritus (mmol n/m**3)
amm: 0.1 # ammonium (mmol n/m**3)
nit: 5.0 # nitrate (mmol n/m**3)
pho: 2.0 # phosphate (mmol p/m**3)
oxy: 100.0 # oxygen (mmol o2/m**3)
coupling:
diatoms:
model: uhh_diatoms
parameters:
mumax: 0.95 # , default = 0.4000000059604645
vmort: 0.02 # , default = 0.029999999329447746
rmort: 0.02 # , default = 0.029999999329447746
rkn: 0.5 # , default = 0.5
rdepo: 5.6e-06 # , default = 5.599999894911889e-06
alpha: 0.24 # , default = 0.18000000715255737
w_dia: -0.12 # , default = 0.0
rkc: 0.03 # , default = 0.07000000029802322
sr: 0.0625 # , default = 0.0625
mdt: 3600.0 # , default = 1800.0
use_mean_growth: false # , default = false
trate_veg_res: 0.04 # , default = 0.019999999552965164
trate_res_veg: 0.2 # , default = 0.019999999552965164
initialization:
veg: 0.01 # diatoms vegetative biomass (mmol n/m**3)
res: 0.01 # vegetatives resting biomass (mmol n/m**3)
coupling:
ammonium_target: nutrient/amm # ammonium source (mmol/m**3)
nitrate_target: nutrient/nit # nitrate source (mmol/m**3)
phosphate_target: nutrient/pho # phosphate source (mmol/m**3)
mortality_target: nutrient/det # sink for dead matter (mmol/m**3)
oxygen_target: nutrient/oxy # dissolved oxygen pool (mmol-O2/m**3)
dinoflag:
model: uhh_dinoflag
parameters:
mumax: 0.4 # , default = 0.4000000059604645
vmort: 0.02 # , default = 0.029999999329447746
rkn: 0.48 # , default = 0.5
rdepo: 7.9e-06 # , default = 5.599999894911889e-06
alpha_dfl: 0.2 # , default = 0.18000000715255737
w_veg: 0.0 # , default = 0.0
w_gam: 0.0 # , default = 0.0
w_res: -8.0 # , default = -8.0
w_ger: 8.0 # , default = 8.0
rkc: 0.03 # , default = 0.07000000029802322
gr_crit: 3.75e-07 # , default = 3.7500001326407073e-07
l_crit: 0.58 # , default = 0.6399999856948853
tmat_crit: 210.0 # , default = 200.0
tmat_initial: 210.0 # , default = 170.0
mdt: 3600.0 # , default = 1800.0
sr: 0.0625 # , default = 0.0625
s2: 6.625 # , default = 6.625
s3: 8.625 # , default = 8.625
trate_veg_gam: 0.015 # , default = 0.014999999664723873
trate_gam_res: 0.06 # , default = 0.05999999865889549
trate_res_ger: 0.05 # , default = 0.05000000074505806
trate_ger_veg: 0.3 # , default = 0.30000001192092896
use_doy_for_maturation: false # , default = false
doy_max: 100.0 # , default = 100.0
initialization:
veg: 0.01 # dinoflagellates vegetative biomass (mmol n/m**3)
gam: 0.01 # dinoflagellates gametes biomass (mmol n/m**3)
res: 0.01 # dinoflagellates resting biomass (mmol n/m**3)
ger: 0.01 # dinoflagellates germinating biomass (mmol n/m**3)
coupling:
ammonium_target: nutrient/amm # ammonium source (mmol/m**3)
nitrate_target: nutrient/nit # nitrate source (mmol/m**3)
phosphate_target: nutrient/pho # phosphate source (mmol/m**3)
mortality_target: nutrient/det # sink for dead matter (mmol/m**3)
oxygen_target: nutrient/oxy # dissolved oxygen pool (mmol-O2/m**3)
clc_veg:
model: uhh_clcveg
parameters:
kc: 0.03 # , default = 0.03
alpha: 4.7e-07 # , default = -9.255963134931783e+61
sr: 0.0625 # , default = 0.0625
s2: 6.625 # , default = 6.625
s3: 8.625 # , default = 8.625
q_min: 0.5 # , default = 0.0
scale: 8.0 # , default = 8.0
e_storage_capacity: 5.5 # , default = 5.5
tscale: 2.5e-06 # , default = 2.5e-06
trange: 0.05 # , default = 0.05
kN: 0.3 # , default = 0.3
Qc: 5.5 # , default = 5.5
m: 3.0 # , default = 3.0
fcy2: 4.0 # , default = 4.0
depo: 0.0 # , default = 0.0
n_fixation: false # , default = false
uptake_factor: 4.0 # , default = 0.0
growth_factor: 4.0 # , default = 0.0
lightcapture_factor: 5.0 # , default = 0.0
omega0: 3.866e-06 # , default = 3.7e-06
rmatscale: 45.0 # , default = 45.0
w: 0.10368 # , default = 0.1
mortality_rate: 0.013 # , default = 0.02
fpH_const: 1.0 # , default = 1.0
lifestage_name: vegetative_cells # , default =
next_in_cycle: heterocysts # , default =
initialization:
C: 0.01 # vegetative_cells biomass (mmol n/m**3)
G: 0.0075 # vegetative_cells energy (mmol n/m**3)
S: 0.0075 # vegetative_cells quota (mmol n/m**3)
coupling:
ammonium_target: nutrient/amm # ammonium source (mmol/m**3)
nitrate_target: nutrient/nit # nitrate source (mmol/m**3)
phosphate_target: nutrient/pho # phosphate source (mmol/m**3)
mortality_target: nutrient/det # sink for dead matter (mmol/m**3)
oxygen_target: nutrient/oxy # dissolved oxygen pool (mmol-O2/m**3)
next_C: clc_het/C # next clc biomass (mmol-N/m**3)
next_G: clc_het/G # next clc energy (mmol-N/m**3)
next_S: clc_het/S # next clc quota (mmol-N/m**3)
clc_het:
model: uhh_clchet
parameters:
kc: 0.03 # , default = 0.03
alpha: 4.7e-07 # , default = -9.255963134931783e+61
sr: 0.0625 # , default = 0.0625
s2: 6.625 # , default = 6.625
s3: 8.625 # , default = 8.625
e_min: 0.5 # , default = 0.0
scale: 8.0 # , default = 8.0
e_storage_capacity: 5.5 # , default = 5.5
tscale: 2.5e-06 # , default = 2.5e-06
trange: 0.05 # , default = 0.05
kN: 0.3 # , default = 0.3
Qc: 5.5 # , default = 5.5
m: 3.0 # , default = 3.0
fcy2: 4.0 # , default = 4.0
depo: 0.0 # , default = 0.0
n_fixation: true # , default = false
uptake_factor: 0.0 # , default = 0.0
growth_factor: 1.0 # , default = 0.0
lightcapture_factor: 5.0 # , default = 0.0
omega0: 3.866e-06 # , default = 3.7e-06
rmatscale: 45.0 # , default = 45.0
w: 0.10368 # , default = 0.1
mortality_rate: 0.013 # , default = 0.02
fpH_const: 1.0 # , default = 1.0
lifestage_name: heteocysts # , default =
next_in_cycle: akinetes # , default =
initialization:
C: 0.01 # heteocysts biomass (mmol n/m**3)
G: 0.0075 # heteocysts energy (mmol n/m**3)
S: 0.0025 # heteocysts quota (mmol n/m**3)
coupling:
ammonium_target: nutrient/amm # ammonium source (mmol/m**3)
nitrate_target: nutrient/nit # nitrate source (mmol/m**3)
phosphate_target: nutrient/pho # phosphate source (mmol/m**3)
mortality_target: nutrient/det # sink for dead matter (mmol/m**3)
oxygen_target: nutrient/oxy # dissolved oxygen pool (mmol-O2/m**3)
next_C: clc_aki/C # next clc biomass (mmol-N/m**3)
next_G: clc_aki/G # next clc energy (mmol-N/m**3)
next_S: clc_aki/S # next clc quota (mmol-N/m**3)
clc_aki:
model: uhh_clcaki
parameters:
kc: 0.03 # , default = 0.03
alpha: 4.7e-07 # , default = -9.255963134931783e+61
sr: 0.0625 # , default = 0.0625
s2: 6.625 # , default = 6.625
s3: 8.625 # , default = 8.625
q_max: 0.5 # , default = 1.0
scale: 8.0 # , default = 8.0
e_storage_capacity: 5.5 # , default = 5.5
tscale: 2.5e-06 # , default = 2.5e-06
trange: 0.05 # , default = 0.05
kN: 0.3 # , default = 0.3
Qc: 5.5 # , default = 5.5
m: 3.0 # , default = 3.0
fcy2: 4.0 # , default = 4.0
depo: 1e-08 # , default = 0.0
n_fixation: false # , default = false
uptake_factor: 2.0 # , default = 0.0
growth_factor: 0.0 # , default = 0.0
lightcapture_factor: 3.0 # , default = 0.0
omega0: 2.8e-06 # , default = 3.7e-06
rmatscale: 45.0 # , default = 45.0
w: -10.368 # , default = 0.1
mortality_rate: 0.00013 # , default = 0.02
fpH_const: 1.0 # , default = 1.0
lifestage_name: akinetes # , default =
next_in_cycle: recruitive_cells # , default =
initialization:
C: 0.01 # akinetes biomass (mmol n/m**3)
G: 0.0025 # akinetes energy (mmol n/m**3)
S: 0.0025 # akinetes quota (mmol n/m**3)
coupling:
ammonium_target: nutrient/amm # ammonium source (mmol/m**3)
nitrate_target: nutrient/nit # nitrate source (mmol/m**3)
phosphate_target: nutrient/pho # phosphate source (mmol/m**3)
mortality_target: nutrient/det # sink for dead matter (mmol/m**3)
oxygen_target: nutrient/oxy # dissolved oxygen pool (mmol-O2/m**3)
next_C: clc_rec/C # next clc biomass (mmol-N/m**3)
next_G: clc_rec/G # next clc energy (mmol-N/m**3)
next_S: clc_rec/S # next clc quota (mmol-N/m**3)
clc_rec:
model: uhh_clcrec
parameters:
kc: 0.03 # , default = 0.03
alpha: 4.7e-07 # , default = -9.255963134931783e+61
sr: 0.0625 # , default = 0.0625
s2: 6.625 # , default = 6.625
s3: 8.625 # , default = 8.625
e_max: 0.5 # , default = 1.0
scale: 8.0 # , default = 8.0
e_storage_capacity: 5.5 # , default = 5.5
tscale: 2.5e-06 # , default = 2.5e-06
trange: 0.05 # , default = 0.05
kN: 0.3 # , default = 0.3
Qc: 5.5 # , default = 5.5
m: 3.0 # , default = 3.0
fcy2: 4.0 # , default = 4.0
depo: 0.0 # , default = 0.0
n_fixation: false # , default = false
uptake_factor: 4.0 # , default = 0.0
growth_factor: 0.0 # , default = 0.0
lightcapture_factor: 5.0 # , default = 0.0
omega0: 2.8e-06 # , default = 3.7e-06
rmatscale: 45.0 # , default = 45.0
w: 1.728 # , default = 0.1
mortality_rate: 0.013 # , default = 0.02
fpH_const: 1.0 # , default = 1.0
lifestage_name: recruitive_cells # , default =
next_in_cycle: vegetative_cells # , default =
initialization:
C: 0.01 # recruitive_cells biomass (mmol n/m**3)
G: 0.0025 # recruitive_cells energy (mmol n/m**3)
S: 0.0075 # recruitive_cells quota (mmol n/m**3)
coupling:
ammonium_target: nutrient/amm # ammonium source (mmol/m**3)
nitrate_target: nutrient/nit # nitrate source (mmol/m**3)
phosphate_target: nutrient/pho # phosphate source (mmol/m**3)
mortality_target: nutrient/det # sink for dead matter (mmol/m**3)
oxygen_target: nutrient/oxy # dissolved oxygen pool (mmol-O2/m**3)
next_C: clc_veg/C # next clc biomass (mmol-N/m**3)
next_G: clc_veg/G # next clc energy (mmol-N/m**3)
next_S: clc_veg/S # next clc quota (mmol-N/m**3)
zoo:
model: uhh_ergom_split_zoo
parameters:
zoo0: 0.0045 # , default = 0.0225
p_to_n: 0.0625 # , default = 0.0625
s2: 6.625 # , default = 6.625
s3: 8.625 # , default = 8.625
iv: 0.25 # , default = 0.24444444
slopf: 1.0 # , default = 1.0
topt: 20.0 # , default = 20.0
gmax_dia: 0.4 # , default = -1.0
gmax_din: 0.5 # , default = 0.03
excretion_rate: 0.07 # , default = 0.01
mortality_rate: 0.13 # , default = 0.02
initialization:
zoo: 0.1 # zooplankton (mmol n/m**3)
coupling:
ammonium_target: nutrient/amm # sink for excreted matter and ammonium source (mmol/m**3)
phosphate_target: nutrient/pho # phosphate source (mmol/m**3)
mortality_target: nutrient/det # sink for dead matter (mmol/m**3)
oxygen_target: nutrient/oxy # dissolved oxygen pool (mmol-O2/m**3)
diatoms_target: diatoms/veg # diatom prey (mmol/m**3)
dinoflagellates_target: dinoflag/veg # dinoflagellate prey (mmol/m**3)
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment