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#include "cppdefs.h"
!-----------------------------------------------------------------------
!BOP
!
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! !MODULE: variables_3d - global 3D related variables \label{sec-variables-3d}
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!
! !INTERFACE:
   module variables_3d
!
! !DESCRIPTION:
!  This modules contains declarations for all variables related to 3D
!  hydrodynamical calculations. Information about the calculation domain
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!  is included from the {\tt domain} module.
!  The variables are either statically defined in {\tt static\_3d.h} or
!  dynamically allocated in {\tt dynamic\_declarations\_3d.h}.
!  The variables which need to be declared have the following dimensions,
!  units and meanings:
!
! \vspace{0.5cm}
! \begin{supertabular}{llll}
! {\tt kmin} & 2D & [-] & lowest index in T-point \\
! {\tt kumin} & 2D &[-]  & lowest index in U-point \\
! {\tt kvmin} & 2D &[-]  & lowest index in V-point \\
! {\tt kmin\_pmz} & 2D &[-]  & lowest index in T-point (poor man's
! $z$-coordinate)\\
! {\tt kumin\_pmz} & 2D &[-]  & lowest index in U-point (poor man's
! $z$-coordinate)\\
! {\tt kvmin\_pmz} & 2D &[-]  & lowest index in V-point (poor man's
! $z$-coordinate)\\
! {\tt uu} & 3D & [m$^2$s$^{-1}$] & layer integrated $u$ transport
! $p_k$\\
! {\tt vv} & 3D & [m$^2$s$^{-1}$] & layer integrated $v$ transport
! $q_k$\\
! {\tt ww} & 3D & [m\,s$^{-1}$] & grid-related vertical velocity
! $\bar w_k$\\
! {\tt ho} & 3D & [m] & old layer height in T-point \\
! {\tt hn} & 3D & [m]& new layer height in T-point \\
! {\tt huo} & 3D &[m]& old layer height in U-point \\
! {\tt hun} & 3D & [m]& new layer height in U-point \\
! {\tt hvo} & 3D & [m]& old layer height in V-point \\
! {\tt hvn} & 3D & [m]& new layer height in V-point \\
! {\tt hcc} & 3D &[-] & hydrostatic consistency index in T-points\\
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! {\tt uuEx} & 3D & [m$^2$s$^{-2}$] & sum of advection and
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! diffusion for $u$-equation\\
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! {\tt vvEx} & 3D &  [m$^2$s$^{-2}$]& sum of advection and
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! diffusion for $v$-equation\\
! {\tt num} & 3D &  [m$^2$s$^{-1}$]& eddy viscosity on $w$-points
! $\nu_t$\\
! {\tt nuh} & 3D &  [m$^2$s$^{-1}$]& eddy diffusivity on $w$-points $\nu'_t$\\
! {\tt tke} & 3D &  [m$^2$s$^{-2}$]& turbulent kinetic energy $k$\\
! {\tt eps} & 3D &  [m$^2$s$^{-3}$]& turbulent dissipation rate
! $\eps$ \\
! {\tt SS} & 3D & [s$^{-2}$]& shear-frequency squared $M^2$ \\
! {\tt NN} & 3D &  [s$^{-2}$]& Brunt-V\"ais\"al\"a frequency squared$N^2$ \\
! {\tt S} & 3D & [psu] & salinity $S$ \\
! {\tt T} & 3D & [$^{\circ}$C]& potential temperature $\theta$ \\
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! {\tt rad} & 3D & [Wm$^{-2}$]& Short wave penetration \\
! {\tt rho} & 3D & [kg\,m$^{-3}$]& density $rho$ \\
! {\tt buoy} & 3D & [m\,s$^{-2}$]& buoyancy $b$ \\
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! {\tt idpdx} & 3D & [m$^2$s$^{-2}$] & $x$-component of internal
! pressure gradient \\
! {\tt idpdy} & 3D & [m$^2$s$^{-2}$]& $y$-component of internal
! pressure gradient\\
! {\tt spm} & 3D & [kg\,m$^{-3}$] & suspended matter concentration \\
! {\tt spm\_ws} & 3D & [m\,s$^{-1}$] & settling velocity of
! suspended matter \\
! {\tt spm\_pool} & 2D & [kg\,m$^{-2}$] & bottom pool of suspended
! matter\\
! {\tt uadv} & 3D & [m\,s$^{-1}$] & interpolated $x$-component of
! momentum advection velocity \\
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! {\tt vadv} & 3D &  [m\,s$^{-1}$]& interpolated $y$-component of
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! momentum advection velocity \\
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! {\tt wadv} & 3D &  [m\,s$^{-1}$]& interpolated  vertical component of
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! momentum advection velocity \\
! {\tt huadv} & 3D &[m] & interpolated height of advective flux
! layer ($x$-component) \\
! {\tt hvadv} & 3D &[m] & interpolated height of advective flux
! layer ($y$-component) \\
! {\tt hoadv} & 3D &[m] & old height of advective finite volume cell
! \\
! {\tt hnadv} & 3D &[m] & new height of advective finite volume
! cell\\
! {\tt sseo} & 2D & [m]& sea surface elevation before macro time
! step (T-point)\\
! {\tt ssen} & 2D & [m]& sea surface elevation after macro time
! step (T-point)\\
! {\tt ssuo} & 2D & [m]& sea surface elevation before macro time
! step (U-point)\\
! {\tt ssun} & 2D & [m]&sea surface elevation after macro time step
! (U-point)\\
! {\tt ssvo} & 2D & [m]& sea surface elevation before macro time
! step (V-point)\\
! {\tt ssvn} & 2D & [m]& sea surface elevation after macro time
! step (V-point)\\
! {\tt rru} & 2D & [m\,s$^{-1}$]&drag coefficient times curret speed
! in U-point\\
! {\tt rrv} & 2D & [m\,s$^{-1}$]&drag coefficient times curret speed
! in V-point\\
! {\tt taus} & 2D & [m$^2$s$^{-2}$]& normalised surface stress
! (T-point) \\
! {\tt taub} & 2D & [m$^2$s$^{-2}$]& normalised bottom stress
! (T-point) \\
! \end{supertabular}
!
! \vspace{0.5cm}
!
! It should be noted that depending on compiler options and runtype not
! all these variables are defined.
!
! The module contains public subroutines to initialise (see
! {\tt init\_variables\_3d}) and cleanup (see {\tt clean\_variables\_3d}).
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!
! !USES:
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   use domain,     only: imin,imax,jmin,jmax,kmax
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   IMPLICIT NONE
!
! !PUBLIC DATA MEMBERS:
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   REALTYPE,dimension(:,:),pointer :: Dold,Dn
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   REALTYPE                            :: dt,cnpar=0.9
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   REALTYPE                            :: avmback=_ZERO_,avhback=_ZERO_
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   logical                             :: do_numerical_analyses=.false.
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!
#ifdef STATIC
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#include "static_3d.h"
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#else
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#include "dynamic_declarations_3d.h"
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#endif

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  REALTYPE, dimension(:,:,:), allocatable   :: numdis3d
  REALTYPE, dimension(:,:), allocatable     :: numdis2d
  REALTYPE, dimension(:,:,:), allocatable   :: nummix3d_S,nummix3d_T
  REALTYPE, dimension(:,:,:), allocatable   :: phymix3d_S,phymix3d_T
  REALTYPE, dimension(:,:), allocatable     :: nummix2d_S,nummix2d_T
  REALTYPE, dimension(:,:), allocatable     :: phymix2d_S,phymix2d_T

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#ifdef GETM_BIO
   REALTYPE, allocatable               :: cc3d(:,:,:,:)
   REALTYPE, allocatable               :: ws3d(:,:,:,:)
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#endif
#ifdef _FABM_
   REALTYPE, allocatable, dimension(:,:,:,:) :: fabm_pel,fabm_diag
   REALTYPE, allocatable, dimension(:,:,:)   :: fabm_ben,fabm_diag_hz
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#endif
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   integer                             :: size3d_field
   integer                             :: mem3d
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   integer                             :: preadapt
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!
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! !REVISION HISTORY:
!  Original author(s): Karsten Bolding & Hans Burchard
!
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!EOP
!-----------------------------------------------------------------------

   contains

!-----------------------------------------------------------------------
!BOP
!
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! !IROUTINE: init_variables_3d - initialise 3D related stuff
! \label{sec-init-variables}
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!
! !INTERFACE:
   subroutine init_variables_3d(runtype)
   IMPLICIT NONE
!
! !INPUT PARAMETERS:
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   integer, intent(in)                 :: runtype
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!
! !DESCRIPTION:
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!  Dynamic allocation of memory for 3D related fields via
!  {\tt dynamic\_allocations\_3d.h} (unless the compiler option
!  {\tt STATIC} is set). Furthermore, most variables are initialised here.
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!
! !LOCAL VARIABLES:
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   integer                   :: rc
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!EOP
!-------------------------------------------------------------------------
!BOC
#ifdef DEBUG
   integer, save :: Ncall = 0
   Ncall = Ncall+1
   write(debug,*) 'init_variables_3d() # ',Ncall
#endif

   LEVEL2 'init_variables_3d'
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   size3d_field=((imax+HALO)-(imin+HALO)+1)*        &
                ((jmax+HALO)-(jmin+HALO)+1)*(kmax+1)
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   mem3d=n3d_fields*size3d_field*REAL_SIZE

!  Allocates memory for the public data members - if not static
#ifndef STATIC
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#include "dynamic_allocations_3d.h"
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#endif

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   Dold => t_Dold ; Dn => t_Dn

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   hn = _ZERO_ ; hun = _ZERO_ ; hvn = _ZERO_
   uu = _ZERO_ ; vv = _ZERO_ ; ww = _ZERO_
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#ifdef _MOMENTUM_TERMS_
   tdv_u = _ZERO_ ; adv_u = _ZERO_ ; vsd_u = _ZERO_ ; hsd_u = _ZERO_
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   cor_u = _ZERO_ ; epg_u = _ZERO_ ; ipg_u = _ZERO_
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   tdv_v = _ZERO_ ; adv_v = _ZERO_ ; vsd_v = _ZERO_ ; hsd_v = _ZERO_
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   cor_v = _ZERO_ ; epg_v = _ZERO_ ; ipg_v = _ZERO_
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#endif
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   ssen = _ZERO_ ; ssun = _ZERO_ ; ssvn = _ZERO_
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   Dold = _ZERO_ ; Dn = _ZERO_ ; Dun = _ZERO_ ; Dvn = _ZERO_
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   rru= _ZERO_ ; rrv= _ZERO_
   uuEx= _ZERO_ ; vvEx= _ZERO_
   tke=1.e-10 ; eps=1.e-10
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   preadapt=0
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#ifndef NO_BAROCLINIC
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   rad=_ZERO_
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   light=_ONE_
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   idpdx=_ZERO_
   idpdy=_ZERO_
#endif

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#ifdef DEBUG
   write(debug,*) 'Leaving init_variables_3d()'
   write(debug,*)
#endif
   return
   end subroutine init_variables_3d
!EOC

!-----------------------------------------------------------------------
!BOP
!
! !IROUTINE: clean_variables_3d - cleanup after 3D run.
!
! !INTERFACE:
   subroutine clean_variables_3d()
   IMPLICIT NONE
!
! !DESCRIPTION:
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!  This routine cleans up after a 3D integrationby doing nothing so far.
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!
!EOP
!-----------------------------------------------------------------------
!BOC
#ifdef DEBUG
   integer, save :: Ncall = 0
   Ncall = Ncall+1
   write(debug,*) 'clean_3d() # ',Ncall
#endif

! Deallocates memory for the public data members

#ifdef DEBUG
     write(debug,*) 'Leaving clean_variables_3d()'
     write(debug,*)
#endif
   return
   end subroutine clean_variables_3d
!EOC

!-----------------------------------------------------------------------

   end module variables_3d

!-----------------------------------------------------------------------
! Copyright (C) 2001 - Hans Burchard and Karsten Bolding (BBH)         !
!-----------------------------------------------------------------------