Merge remote-tracking branch 'origin/master' into output

doc/getm_pub.bib

@@ -15,6 +15,18 @@
 @String{OMOD = "Ocean Modelling"}
 @String{OSCI = "Ocean Science"}
 
+@article{sildever_etal_2017,
+   author = {Sildever, Sirje and Kremp, Anke and Enke, Annely and Buschmann, Fred and Maljutenko, Ilja and Lips, Inga},
+   doi = {10.1016/j.csr.2016.11.012},
+   issn = {02784343},
+   journal = {Continental Shelf Research},
+   pages = {46--55},
+   title = {{Spring bloom dinoflagellate cyst dynamics in three eastern sub-basins of the Baltic Sea}},
+   url = {http://www.sciencedirect.com/science/article/pii/S0278434316303144},
+   volume = {137},
+   year = {2017}
+}
+
 @article{buchmann_and_soderkvist_2016,
 	author  = {Bjarne B\"uchmann and Johan S\"oderkvist},
 	title   = {{Internal variability of a 3-D ocean model}},
@@ -80,6 +92,19 @@
    Url     = {http://dx.doi.org/10.1016/j.ecolmodel.2015.10.023},
 }
 
+@article{soosaar_etal_2016,
+   author = {Soosaar, Edith and Maljutenko, Ilja and Uiboupin, Rivo and Skudra, Maris and Raudsepp, Urmas},
+   doi = {10.5194/os-12-417-2016},
+   issn = {1812-0792},
+   journal = {Ocean Science},
+   number = {2},
+   pages = {417--432},
+   title = {{River bulge evolution and dynamics in a non-tidal sea – Daugava River plume in the Gulf of Riga, Baltic Sea}},
+   url = {http://www.ocean-sci.net/12/417/2016/},
+   volume = {12},
+   year = {2016}
+}
+
 @Article{stanev_etal_2016,
    author = {Stanev, E. V. and Schulz-Stellenfleth, J. and Staneva, J. and Grayek, S. and Grashorn, S. and Behrens, A. and Koch, W. and Pein, J.},
    title = {{Ocean forecasting for the German Bight: from regional to coastal scales}},
@@ -298,17 +323,20 @@
    doi     = {10.1002/2013GL058494},
 }
 
-@article{lessing_etal_2014b,
-   author  = {Gennadi Lessin and Urmas Raudsepp and Ilja Maljutenkoa and
-              Jaan Laanemetsa and Jelena Passenkoa and Andres Jaanusc},
-   title   = {Model study on present and future eutrophication and nitrogen 
-              fixation in the {G}ulf of {F}inland, {B}altic {S}ea},
-   journal = JMS,
-   year    = {2014},
-   doi     = {10.1016/j.jmarsys.2013.08.006},
+@article{lessin_etal_2014b,
+   author = {Lessin, Gennadi and Raudsepp, Urmas and Maljutenko, Ilja and Laanemets, Jaan and Passenko, Jelena and Jaanus, Andres},
+   doi = {10.1016/j.jmarsys.2013.08.006},
+   issn = {09247963},
+   journal = {Journal of Marine Systems},
+   pages = {76--85},
+   publisher = {Elsevier B.V.},
+   title = {{Model study on present and future eutrophication and nitrogen fixation in the Gulf of Finland, Baltic Sea}},
+   url = {http://dx.doi.org/10.1016/j.jmarsys.2013.08.006},
+   volume = {129},
+   year = {2014}
 }
 
-@article{lessing_etal_2014,
+@article{lessin_etal_2014a,
    author  = {Gennadi Lessin and Urmas Raudsepp and Adolf Stips},
    title   = {Modelling the Influence of {M}ajor {B}altic {In}flows on 
               {N}ear-{B}ottom {C}onditions at the {E}ntrance of the {G}ulf 
@@ -350,6 +378,19 @@
    doi      = {10.1016/j.ocemod.2014.06.001},
 }
 
+@article{soosaar_etal_2014,
+   author = {Soosaar, Edith and Maljutenko, Ilja and Raudsepp, Urmas and Elken, J{\"{u}}ri},
+   doi = {10.1016/j.csr.2014.02.009},
+   issn = {02784343},
+   journal = {Continental Shelf Research},
+   pages = {75--84},
+   publisher = {Elsevier},
+   title = {{An investigation of anticyclonic circulation in the southern Gulf of Riga during the spring period}},
+   url = {http://linkinghub.elsevier.com/retrieve/pii/S0278434314000636},
+   volume = {78},
+   year = {2014}
+}
+
 @Article{stanev_etal_2014a,
    author  = "Stanev, Emil V. and Al-Nadhairi, Rahma and Staneva, Joanna and Schulz-Stellenfleth, Johannes and Valle-Levinson, Arnoldo",
    title   = "Tidal wave transformations in the {G}erman {B}ight",
@@ -462,6 +503,17 @@
    doi      = {10.1016/j.ocemod.2012.10.002},
 }
 
+@article{raudsepp_etal_2013,
+   author = {Raudsepp, Urmas and Laanemets, Jaan and Maljutenko, Ilja and Hongisto, Marke and Jalkanen, Jukka-pekka},
+   doi = {10.5697/oc.55-3.000},
+   journal = {Oceanologia},
+   number = {4},
+   pages = {1--21},
+   title = {{Impact of ship-borne nitrogen deposition on the Gulf of Finland ecosystem : an evaluation}},
+   volume = {55},
+   year = {2013}
+}
+
 @article{schernewski_etal_2012,
    author   = {G. Schernewski and E. Fischer and T. Huttula and G. Jost
                and M. Ras},

src/domain/domain.F90

@@ -504,9 +504,6 @@
 
 !        we need latx to calculate dxv - utilize equidistance
          latx(ill:ihl,jll-1) = latc(ill:ihl,jll) - dlat/2.
-STDERR ill,jll,dlat/2.
-STDERR latc(1,1),latx(1,0)
-!stop
          n=1
          do j=jll,jhl
             latx(ill:ihl,j) = latx(ill:ihl,jll-1) + n*dlat

src/getm/main.F90

@@ -193,6 +193,9 @@
 #endif
 
 !
+#ifdef SLICE_MODEL
+   LEVEL1 'SLICE_MODEL'
+#endif
 #ifdef NO_3D
    LEVEL1 'NO_3D'
 #endif